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Add comprehensive conda integration for academic environments

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Enhanced conda support to handle custom environment and package directories:

Key Changes:
- Mount conda installation at original path (not /opt/miniconda3)
- Add CONDA_EXTRA_DIRS for mounting additional search paths
- Mount all conda-configured directories to preserve existing setup
- Update CLAUDE.md to use ${CONDA_EXE} environment variable

Technical Details:
- Preserves original conda paths so existing configuration works
- Handles multiple envs_dirs and pkgs_dirs automatically
- Provides feedback about which directories are mounted
- Falls back gracefully for missing directories

Example usage: CONDA_EXTRA_DIRS="/vol/path/.conda/envs /vol/path/conda_envs /vol/path/.conda/pkgs"
Result: All conda environments and packages accessible in container.
This commit is contained in:
Vishal Jain
2025-06-18 00:21:01 +01:00
parent 7cd765b756
commit a53d28bf2f
3 changed files with 72 additions and 9 deletions
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9
.env.example
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@@ -8,4 +8,11 @@ ANTHROPIC_API_KEY=your_anthropic_api_key_here
TWILIO_ACCOUNT_SID=your_twilio_account_sid
TWILIO_AUTH_TOKEN=your_twilio_auth_token
TWILIO_FROM_NUMBER=+1234567890
TWILIO_TO_NUMBER=+0987654321
TWILIO_TO_NUMBER=+0987654321
# Optional: Custom conda installation (for academic/lab environments)
# Example: CONDA_PREFIX=/vol/biomedic3/username/miniconda3
CONDA_PREFIX=
# Optional: Additional conda directories (space-separated list)
# Example: CONDA_EXTRA_DIRS="/vol/biomedic3/username/.conda/envs /vol/biomedic3/username/conda_envs /vol/biomedic3/username/.conda/pkgs /vol/biomedic3/username/conda_pkgs /homes/username/.conda/envs"
CONDA_EXTRA_DIRS=