Remove orphaned setup-env.sh script

This script was not referenced anywhere in the codebase and used
an outdated approach for credential management. Current workflow
bakes credentials into Docker image from .env file in project root.
This commit is contained in:
Vishal Jain
2025-06-18 12:32:36 +01:00
parent 1b056bdcd3
commit b7735057b3
3 changed files with 2 additions and 131 deletions

View File

@@ -1,9 +1,6 @@
# Copy this file to .env and fill in your credentials
# The .env file will be baked into the Docker image during build
# Required for Claude Code if not using via subscription.
ANTHROPIC_API_KEY=your_anthropic_api_key_here
# Optional: Twilio credentials for SMS notifications
TWILIO_ACCOUNT_SID=your_twilio_account_sid
TWILIO_AUTH_TOKEN=your_twilio_auth_token
@@ -11,7 +8,7 @@ TWILIO_FROM_NUMBER=+1234567890
TWILIO_TO_NUMBER=+0987654321
# Optional: Custom conda installation (for academic/lab environments)
# Example: CONDA_PREFIX=/vol/biomedic3/username/miniconda3
# Example: CONDA_PREFIX=/path/to/miniconda3
CONDA_PREFIX=
# Optional: Additional conda directories (space-separated list)
@@ -19,7 +16,7 @@ CONDA_PREFIX=
# Automatic detection:
# - Paths with "*env*" are added to CONDA_ENVS_DIRS (for environments)
# - Paths with "*pkg*" are added to CONDA_PKGS_DIRS (for package cache)
# Example: CONDA_EXTRA_DIRS="/vol/biomedic3/username/.conda/envs /vol/biomedic3/username/conda_envs /vol/biomedic3/username/.conda/pkgs /vol/biomedic3/username/conda_pkgs /homes/username/.conda/envs"
# Example: CONDA_EXTRA_DIRS="/vol/lab/username/.conda/envs /vol/lab/username/conda_envs /vol/lab/username/.conda/pkgs /vol/lab/username/conda_pkgs"
CONDA_EXTRA_DIRS=
# Optional: System packages to install in Docker container (space-separated)